Function reference • rirods

Connecting and authentication

Functions for saving server details and authentication

create_irods(): Generate IRODS Configuration File

iauth(): Authentication Service for an iRODS Zone

is_connected_irods(): Predicate for iRODS Connectivity

Navigating the iRODS Zone

Logical paths of iRODS and listing content of collections

icd() ipwd(): Get or Set Current Working Directory in iRODS

ils(): List iRODS Data Objects and Collections

Managing collections

Creating and removing data objects and collections within iRODS

irm(): Remove Data Objects or Collections in iRODS

imkdir(): Create a New Collection in iRODS

Moving objects

Functions to transfer and download R objects and files to and from iRODS

iput() isaveRDS(): Save Files and Objects in iRODS

iget() ireadRDS(): Retrieve File or Object from iRODS

Metadata

Functions to annotate collections and data objects as well as discovery of objects and collections in iRODS

imeta(): Add or Remove Metadata

iquery(): Query Data Objects and Collections in iRODS

Demonstrating iRODS

Functions to demonstrate iRODS capabilities in a Docker container

use_irods_demo() stop_irods_demo(): Run Docker iRODS Demonstration Service

is_irods_demo_running(): Predicate for iRODS Demonstration Service State

iadmin(): The Administration Interface to iRODS

iRODS s3 class

Functions to coerce and print irods_df s3 class

as.data.frame(<irods_df>): Coerce to a Data Frame

print(<irods_df>): Print Method for iRODS Data Frame Class.